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ENVIREMData ENVIronmental Rasters for Ecologicalmodeling (ENVIREM) is an
open database of climatic and topographic variables used in species distributionmod-
eling and other applications. The database contains 41 variables including aridity and
potentialevapotranspiration[12].Anexampleof rasters fromtheENVIREMdatabase is
represented in thefigure2.
Figure2. AnnualMeanTemperatureDistribution
2.3. Approach
The approachwe used in this work is FIGS,which is amethod based on two distinct
pathways.Thefirst pathway is usingfilteringwhennoevaluationdata is available.This
approachmimics the adaptation patterns of a trait and applies same selection pressure
exerted onplants by evolution to develop abest subset containing accessionswith high
probabilityofhavingtheadaptive traits.Thesecondpathwayis themachine learningap-
proachusedwhenpartial evaluationof thecollection is available.Themachine learning
algorithmsfinda function that links adaptive traits, environments (andassociated selec-
tionpressures)withgenebankaccessions.
In the modeling, the following machine learning algorithms were used: K-nearest
neighbours(KNN)[13], Support Vector Machines(SVM)[14], Random Forest(RF)[15],
ArtificialNeuralNetworks(NNET)[16] andBaggedCarts(BCART)[17]. Eachmachine
learningmodelwas tuned to select best tuningparameters using a training set and then
thebestmodelwasselectedbetweendifferentmachine learningmodelsbasedonseveral
metrics includingaccuracy, specificity andKappa.Thesemetricswere computedon the
test set.
Then each traitwas predicted for non-evaluated ICARDAbarley accessions andweas-
Z.Azoughetal. /PredictiveCharacterizationof
ICARDAGenebankBarleyAccessions124
Intelligent Environments 2019
Workshop Proceedings of the 15th International Conference on Intelligent Environments
- Titel
- Intelligent Environments 2019
- Untertitel
- Workshop Proceedings of the 15th International Conference on Intelligent Environments
- Autoren
- Andrés Muñoz
- Sofia Ouhbi
- Wolfgang Minker
- Loubna Echabbi
- Miguel Navarro-Cía
- Verlag
- IOS Press BV
- Datum
- 2019
- Sprache
- deutsch
- Lizenz
- CC BY-NC 4.0
- ISBN
- 978-1-61499-983-6
- Abmessungen
- 16.0 x 24.0 cm
- Seiten
- 416
- Kategorie
- Tagungsbände