Seite - 20 - in Charge Transport in DNA - Insights from Simulations
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TheoreticalBackground
electron-electron interaction, Exc[ρ(r)] is the exchange correlation energymissing
in the classical termand JNN[ρ(r)] is the interactionbetween thenuclei.
While the functionals for theelectron-electronand theelectron-core interactionare
known from the Hartree theory, the exact form of the functionals for the kinetic
energyof the electronsand theexchange correlationareunknown.
In1965,KohnandShamintroducedthe ideatodescribe thekineticenergybyusing
Hartree–Fock likeorbitals, the so-calledKohn–Shamorbitals [64].
In thisapproach,an imaginarysetofone-electronequations, theKohn–Shamequa-
tions, is built.
(
−1
2 ∇2+V(r) )
φi= iφi(r) (2.18)
Although, this construction counteracts the ideaoforbital-freeDFT, it isuntil now
theonly computationally convenient andwidelyused solution.
The still missing Exc[ρ] now has to be approximated. Many methods have been
developed, and themostwidelyusedare:
• localdensity approximation (LDA)
Exc=F[ρ(r)]
• generalizedgradient approximation (GGA)
Exc=F[ρ(r),∇ρ(r)]
• meta-GGA
Exc=F[ρ(r),∇ρ(r),∇2ρ(r)]
• hybrid functionals: e. g. addingHFexchange (e.g. B3LYP)
With these methods, the electronic structure of any system can be determined.
Despite the ideaof onlyusing thedensity, the requiredorbitals for the calculation
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Inhaltsverzeichnis
- Zusammenfassung 1
- Summary 3
- 1 Introduction 5
- 2 TheoreticalBackground 11
- 3 SimulationSetup 39
- 4 DNAUnderExperimentalConditions 49
- 5 ChargeTransport inStretchedDNA 69
- 6 ChargeTransport inMicrohydratedDNA 79
- 7 AParametrizedModel toSimulateCT inDNA 89
- 8 Conclusion 105
- Appendix 111
- A DNAUnderExperimentalConditions 111
- B CTinMicrohydratedDNA 117
- List ofPublications 137