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APPENDIXB
CT inMicrohydratedDNA
B.1 HelicalParameters -CompleteOverview
TableB.1: Inter-base-pairhelicalparametersof all investigatedDNAsequences.Mean
values for the seven innermost base pairs obtained along 15nsMDtrajec-
tories.
DNA Env. Shift [Ă
] Slide [Ă
] Rise [Ă
] Tilt [âŠ] Roll [âŠ] Twist [âŠ]
AA Full â0.09 â0.73 3.36 â0.80 0.93 33.20
Dry1 â0.12 â0.11 3.28 â1.06 6.61 33.80
Dry2 0.08 0.84 2.93 â1.80 13.00 27.98
AG Full â0.09 â0.88 3.38 â0.60 2.90 32.04
Dry1 â0.31 â0.59 3.34 â1.92 10.46 33.06
Dry2 â0.58 â1.01 3.42 â3.29 17.70 31.94
AT Full 0.03 â0.81 3.29 0.00 5.71 30.97
Dry1 0.07 â0.71 3.23 â0.36 12.77 30.42
Dry2 â0.62 0.76 2.81 3.18 13.26 39.74
GG Full â0.13 â1.47 3.39 â0.51 4.60 29.00
Dry1 â0.11 â1.53 3.36 â0.66 13.69 29.84
Dry2 â0.17 â1.55 3.39 â0.40 15.96 31.11
GC Full â0.03 â0.40 3.35 â0.13 4.37 32.79
Dry1 â0.10 0.68 3.34 â0.71 â2.83 37.41
Dry2 â0.35 1.42 3.43 â3.07 â8.59 39.05
GT Full 0.09 â0.69 3.34 0.58 5.43 31.65
Dry1 0.11 â0.81 3.27 0.61 15.46 29.83
Dry1 0.12 â0.91 3.34 0.61 17.73 31.82
117
Charge Transport in DNA
Insights from Simulations
- Titel
- Charge Transport in DNA
- Untertitel
- Insights from Simulations
- Autor
- Mario Wolter
- Verlag
- KIT Scientific Publishing
- Datum
- 2013
- Sprache
- englisch
- Lizenz
- CC BY-SA 3.0
- ISBN
- 978-3-7315-0082-7
- Abmessungen
- 17.0 x 24.0 cm
- Seiten
- 156
- Schlagwörter
- Charge Transport, Charge Transfer, DNA, Molecular Dynamics, Quantum Mechanics
- Kategorien
- Naturwissenschaften Chemie
Inhaltsverzeichnis
- Zusammenfassung 1
- Summary 3
- 1 Introduction 5
- 2 TheoreticalBackground 11
- 3 SimulationSetup 39
- 4 DNAUnderExperimentalConditions 49
- 5 ChargeTransport inStretchedDNA 69
- 6 ChargeTransport inMicrohydratedDNA 79
- 7 AParametrizedModel toSimulateCT inDNA 89
- 8 Conclusion 105
- Appendix 111
- A DNAUnderExperimentalConditions 111
- B CTinMicrohydratedDNA 117
- List ofPublications 137