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APPENDIXB
CT inMicrohydratedDNA
B.1 HelicalParameters -CompleteOverview
TableB.1: Inter-base-pairhelicalparametersof all investigatedDNAsequences.Mean
values for the seven innermost base pairs obtained along 15nsMDtrajec-
tories.
DNA Env. Shift [Å] Slide [Å] Rise [Å] Tilt [◦] Roll [◦] Twist [◦]
AA Full −0.09 −0.73 3.36 −0.80 0.93 33.20
Dry1 −0.12 −0.11 3.28 −1.06 6.61 33.80
Dry2 0.08 0.84 2.93 −1.80 13.00 27.98
AG Full −0.09 −0.88 3.38 −0.60 2.90 32.04
Dry1 −0.31 −0.59 3.34 −1.92 10.46 33.06
Dry2 −0.58 −1.01 3.42 −3.29 17.70 31.94
AT Full 0.03 −0.81 3.29 0.00 5.71 30.97
Dry1 0.07 −0.71 3.23 −0.36 12.77 30.42
Dry2 −0.62 0.76 2.81 3.18 13.26 39.74
GG Full −0.13 −1.47 3.39 −0.51 4.60 29.00
Dry1 −0.11 −1.53 3.36 −0.66 13.69 29.84
Dry2 −0.17 −1.55 3.39 −0.40 15.96 31.11
GC Full −0.03 −0.40 3.35 −0.13 4.37 32.79
Dry1 −0.10 0.68 3.34 −0.71 −2.83 37.41
Dry2 −0.35 1.42 3.43 −3.07 −8.59 39.05
GT Full 0.09 −0.69 3.34 0.58 5.43 31.65
Dry1 0.11 −0.81 3.27 0.61 15.46 29.83
Dry1 0.12 −0.91 3.34 0.61 17.73 31.82
117
Charge Transport in DNA
Insights from Simulations
- Title
- Charge Transport in DNA
- Subtitle
- Insights from Simulations
- Author
- Mario Wolter
- Publisher
- KIT Scientific Publishing
- Date
- 2013
- Language
- English
- License
- CC BY-SA 3.0
- ISBN
- 978-3-7315-0082-7
- Size
- 17.0 x 24.0 cm
- Pages
- 156
- Keywords
- Charge Transport, Charge Transfer, DNA, Molecular Dynamics, Quantum Mechanics
- Categories
- Naturwissenschaften Chemie
Table of contents
- Zusammenfassung 1
- Summary 3
- 1 Introduction 5
- 2 TheoreticalBackground 11
- 3 SimulationSetup 39
- 4 DNAUnderExperimentalConditions 49
- 5 ChargeTransport inStretchedDNA 69
- 6 ChargeTransport inMicrohydratedDNA 79
- 7 AParametrizedModel toSimulateCT inDNA 89
- 8 Conclusion 105
- Appendix 111
- A DNAUnderExperimentalConditions 111
- B CTinMicrohydratedDNA 117
- List ofPublications 137