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CTinMicrohydratedDNA
B.4 ESPInducedbyDifferentGroupsofAtoms
TableB.8: ESP(inV) inducedbythedifferentgroupsofatoms, insimulationsofDNA
indifferent environments.Meanvalues (± std. deviations) over15nsMD
trajectories.
DNA Env. System DNA Water Na+
AA Full 0.49±0.29 â25.31 7.76 18.05
Dry1 0.10±0.28 â26.61 1.01 25.70
Dry2 0.20±0.30 â28.41 0.33 28.28
AG Full 0.52±0.30 â22.19 6.70 16.01
Dry1 0.10±0.30 â23.81 0.60 23.31
Dry2 0.10±0.29 â25.10 0.67 24.52
AT Full 0.47±0.29 â22.29 7.29 15.47
Dry1 0.04±0.28 â23.80 1.07 22.77
Dry2 â0.01±0.31 â25.85 0.28 25.56
GG Full 0.61±0.31 â24.26 6.16 18.71
Dry1 0.25±0.30 â26.48 0.37 26.37
Dry2 0.21±0.30 â27.84 0.54 27.50
GC Full 0.51±0.31 â22.60 6.45 16.67
Dry1 0.11±0.30 â24.04 0.75 23.40
Dry2 0.17±0.30 â24.49 0.45 24.20
GT Full 0.50±0.30 â25.25 6.91 18.85
Dry1 0.11±0.29 â26.91 0.76 26.25
Dry2 0.10±0.29 â28.19 0.84 27.45
122
Charge Transport in DNA
Insights from Simulations
- Title
- Charge Transport in DNA
- Subtitle
- Insights from Simulations
- Author
- Mario Wolter
- Publisher
- KIT Scientific Publishing
- Date
- 2013
- Language
- English
- License
- CC BY-SA 3.0
- ISBN
- 978-3-7315-0082-7
- Size
- 17.0 x 24.0 cm
- Pages
- 156
- Keywords
- Charge Transport, Charge Transfer, DNA, Molecular Dynamics, Quantum Mechanics
- Categories
- Naturwissenschaften Chemie
Table of contents
- Zusammenfassung 1
- Summary 3
- 1 Introduction 5
- 2 TheoreticalBackground 11
- 3 SimulationSetup 39
- 4 DNAUnderExperimentalConditions 49
- 5 ChargeTransport inStretchedDNA 69
- 6 ChargeTransport inMicrohydratedDNA 79
- 7 AParametrizedModel toSimulateCT inDNA 89
- 8 Conclusion 105
- Appendix 111
- A DNAUnderExperimentalConditions 111
- B CTinMicrohydratedDNA 117
- List ofPublications 137