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2.3QuantumChemistry
However, this is not theway to go, since the determination of the trueN-particle
wave function is a complicated task. Therefore, a less complicated approach is
soughtwhichdetermines thedensitydirectlyand is able to calculate theenergyof
the systemdirectly fromthisdensity.
An important point here is to prove that the density is an unique feature of a
certain system and therefore the energy can be uniquely determined. Moreover,
the obtained density functional E[ρ(r)] has to follow the variational principle for
energyminimization. In the following, bothof these issueswere solved.
It is well established that the electron density is uniquely determined in a given
external potentialVext[ρ(r)]. Touse adensity-functional for thedescriptionof sys-
temproperties this correlation has to be invertible. Hohenberg andKohnproved
in1964 that theexternalpotential and thus thegroundstatepropertiesof a system
aredetermineduniquelyby theelectrondensity ρ(r) [62].
ρ(r)→Vext[ρ(r)] (2.15)
The second theorem byHohenberg andKohn implies that the energy functional
takes aminimumvalue for thegroundstatedensity:
E[ρ0]≤E[ρ˜] (2.16)
where ρ0 is the electrondensity at thegroundstate and ρ˜ is anarbitrarydensity.
Additionally, the Born–Oppenheimer approximation [63] is applied. Due to the
difference inmass between the electrons andnuclei, themotions of theseparticles
canbe treated separately.
With these issues taken care of, a density-functional can be derived and the total
energyof the systemtakes the form:
E[ρ(r)]=T[ρ(r)]+Vext[ρ(r)]+Vee[ρ(r)]+Exc[ρ(r)]+ JNN[ρ(r)] (2.17)
where T[ρ(r)] is the kinetic energy of the electrons,Vext[ρ(r)] is the energy of the
electrons in theexternalfieldof thenuclei,Vee[ρ(r)] is theenergy fromtheclassical
19
Charge Transport in DNA
Insights from Simulations
- Title
- Charge Transport in DNA
- Subtitle
- Insights from Simulations
- Author
- Mario Wolter
- Publisher
- KIT Scientific Publishing
- Date
- 2013
- Language
- English
- License
- CC BY-SA 3.0
- ISBN
- 978-3-7315-0082-7
- Size
- 17.0 x 24.0 cm
- Pages
- 156
- Keywords
- Charge Transport, Charge Transfer, DNA, Molecular Dynamics, Quantum Mechanics
- Categories
- Naturwissenschaften Chemie
Table of contents
- Zusammenfassung 1
- Summary 3
- 1 Introduction 5
- 2 TheoreticalBackground 11
- 3 SimulationSetup 39
- 4 DNAUnderExperimentalConditions 49
- 5 ChargeTransport inStretchedDNA 69
- 6 ChargeTransport inMicrohydratedDNA 79
- 7 AParametrizedModel toSimulateCT inDNA 89
- 8 Conclusion 105
- Appendix 111
- A DNAUnderExperimentalConditions 111
- B CTinMicrohydratedDNA 117
- List ofPublications 137