Page - 127 - in Charge Transport in DNA - Insights from Simulations

BIBLIOGRAPHY separationandpredictsanovel ladder structure. J.Am.Chem.Soc.,1996. 118, 45,10989–10994. [23] J. F. Allemand, D. Bensimon, R. Lavery, and V. Croquette. Stretched and overwound DNA forms a Pauling-like structure with exposed bases. Proc. Natl.Acad. Sci.USA,1998. 95,24,14152–14157. [24] C.Bustamante,S.B.Smith, J.Liphardt,andD.Smith. Single-moleculestudies ofDNAmechanics. Curr.Opin. Struct.Biol.,2000. 10,3,279–285. [25] H. Clausen-Schaumann, M. Seitz, R. Krautbauer, and H. E. Gaub. Force spectroscopywith single bio-molecules. Curr. Opin. Chem. Biol., 2000. 4, 5, 524–530. [26] I. Rouzina andV.A. Bloomfield. Force-inducedmeltingof theDNAdouble helix1. Thermodynamicanalysis. Biophys. J.,2001. 80,2,882–893. [27] S.Cocco, J.Yan, J.-F.Léger,D.Chatenay, and J. F.Marko. Overstretchingand force-driven strand separation of double-helixDNA. Phys. Rev. E, 2004. 70, 1,011910. [28] J. vanMameren,P.Gross,G.Farge,P.Hooijman,M.Modesti,M.Falkenberg, G. J. L.Wuite, andE. J.G. Peterman. Unraveling the structure ofDNAdur- ingoverstretchingbyusingmulticolor, single-moleculefluorescence imaging. Proc.Natl.Acad. Sci.USA,2009. 106,43,18231–18236. [29] C. H. Albrecht, G. Neuert, R. A. Lugmaier, and H. E. Gaub. Molecular force balancemeasurements reveal that double-strandedDNAunbinds un- der force in rate-dependentpathways. Biophys. J.,2008. 94,12,4766–4774. [30] C.Danilowicz,C. Limouse,K.Hatch,A.Conover,V.W.Coljee,N.Kleckner, andM. Prentiss. The structure of DNAoverstretched from the 52˘03252˘032 ends differs from the structure of DNAoverstretched from the 32˘03232˘032 ends. Proc.Natl.Acad. Sci.USA,2009. 106,32,13196–13201. [31] H. Fu, H. Chen, J. F. Marko, and J. Yan. Two distinct overstretched DNA states. NucleicAcidsRes.,2010. 38,16,5594–5600. [32] K.R.Chaurasiya,T.Paramanathan,M. J.McCauley, andM.C.Williams. Bio- physical characterization of DNAbinding from singlemolecule forcemea- 127